Frequently Asked Questions

---

We work with all major MS data formats, including:

- Raw files: .raw (Thermo), .d (Agilent), .wiff (Sciex)

- Open formats: mzML, mzXML, CDF

- Processed data: Compound Discoverer, mzMine, MS-DIAL, Skyline outputs

- Vendor software exports: Excel, CSV, TXT

Yes. We frequently work with existing datasets and can assess data quality, re-process if needed, and perform advanced statistical analysis. We can also join projects mid-stream if you need specialized analysis support.

Timeline depends on project scope:

- Simple re-analysis of processed data: 1–3 weeks

- Full LC–MS data processing and statistics: 4–6 weeks

- Complex multi-omics or large cohorts: 6–8 weeks

- Ongoing collaboration: flexible monthly retainer

Absolutely. All client data is treated as confidential by default. We are happy to sign NDAs, data processing agreements, and GDPR-compliant contracts, and data is stored securely and deleted after project completion unless otherwise agreed.

Standard deliverables typically include:

- Comprehensive analysis report (methods, results, interpretation)

- Publication-quality figures (multiple formats)

- Annotated results tables (feature lists, statistics, pathway results)

- Reproducible R code with documentation

- Raw output files from analysis software

- 30-day support period for follow-up questions

We offer flexible pricing options:

- Fixed-price projects: quote based on scope (typical range: €2,000–€8,000)

- Hourly consulting: €120/hour(excl. taxes) for ad-hoc support

- Monthly retainer: for ongoing collaborations

- Academic discount: 15% discount for non-profit/academic projects

Yes, if the contribution warrants authorship according to ICMJE guidelines. Authorship expectations can be discussed during project planning, and for smaller contributions an acknowledgment is usually more appropriate.

Yes. We offer:

- 1-on-1 training sessions (R, metabolomics tools, workflow design)

- Workshops for research groups (half-day or full-day)

- Custom training tailored to your specific project and data

That is exactly what the free consultation is for. We review your research questions and data together and recommend the most appropriate analysis strategy for your project.

Yes. We work with clients worldwide, with all communication handled remotely via email, video calls, and secure file sharing. Time zone differences are managed flexibly to fit your schedule.